SNP Profiles matching AMAZ 12

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AA	CT	AT
1._AMAZ_12	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AA	CT	AT
2._AMAZ_12	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AA	CT	AT
3._AMAZ_12	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AA	CT	AT
4._AMAZ_12	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AA	CT	AT
5._AMAZ_12	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AA	CT	AT
6._AMAZ_12	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AA	CT	AT
7._AMAZ_12	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AA	CT	AT
8._GC-05-010-1-10	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AA	CT	AT
9._GC-05-010-1-10	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AA	CT	AT
10._GC-05-010-1-10	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AA	CT	AT
11._GC-05-010-1-10	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AA	CT	AT
12._GC-05-010-1-10	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AA	CT	AT
13._GC-05-158-4-11	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AA	CT	AT
14._GC-05-158-4-11	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AA	CT	AT
15._GC-05-158-4-11	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AA	CT	AT
16._AMAZ_12	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AA	CT	AT
17._GC-05-158-4-11	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AA	CT	AT
18._RUQ_40	_	AA	CG	CC	_	_	-	_	_	_	TT	AA	_	_
19._AMAZ_12	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AG	CT	AT
20._GC-05-158-4-11	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AG	CT	AT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
1._AMAZ_12	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
2._AMAZ_12	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
3._AMAZ_12	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
4._AMAZ_12	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
5._AMAZ_12	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
6._AMAZ_12	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
7._AMAZ_12	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
8._GC-05-010-1-10	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
9._GC-05-010-1-10	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
10._GC-05-010-1-10	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
11._GC-05-010-1-10	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
12._GC-05-010-1-10	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
13._GC-05-158-4-11	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
14._GC-05-158-4-11	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
15._GC-05-158-4-11	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
16._AMAZ_12	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
17._GC-05-158-4-11	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
18._RUQ_40	_	_	CT	GG	GT	_	CT	AC	CC	GT	CT	AC	AG	_
19._AMAZ_12	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
20._GC-05-158-4-11	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG

	29	30	31	32	33	34	35	36
_Input profile	AT	CT	AA	CG	CT	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
1._AMAZ_12	AT	CT	AA	CG	CT	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
2._AMAZ_12	AT	CT	AA	CG	CT	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
3._AMAZ_12	AT	CT	AA	CG	CT	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
4._AMAZ_12	AT	CT	AA	CG	CT	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
5._AMAZ_12	AT	CT	AA	CG	CT	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
6._AMAZ_12	AT	CT	AA	CG	CT	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
7._AMAZ_12	AT	CT	AA	CG	CT	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
8._GC-05-010-1-10	AT	CT	AA	CG	CT	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-05-010-1-10	AT	CT	AA	CG	CT	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
10._GC-05-010-1-10	AT	CT	AA	CG	CT	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
11._GC-05-010-1-10	AT	CT	AA	CG	CT	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
12._GC-05-010-1-10	AT	CT	AA	CG	CT	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
13._GC-05-158-4-11	AT	CT	AA	CG	CT	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
14._GC-05-158-4-11	AT	CT	AA	CG	CT	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
15._GC-05-158-4-11	AT	CT	AA	CG	CT	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
16._AMAZ_12	AT	CT	AA	CG	_	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
17._GC-05-158-4-11	AT	CT	AA	CG	_	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
18._RUQ_40	AT	-	AA	CG	CT	GT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
19._AMAZ_12	AT	CT	AA	CG	CT	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
20._GC-05-158-4-11	AT	CT	AA	CG	CT	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: AMAZ_12

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Mars Center for Cocoa Science, Brazil

Location: 5411 5

Dapeng Zhang, 2016

1._AMAZ_12

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5411 1 > FP

Dapeng Zhang, 2016

2._AMAZ_12

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5411 3

Dapeng Zhang, 2016

3._AMAZ_12

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5110 4 > FP

Dapeng Zhang, 2016

4._AMAZ_12

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5110 2 > FP

Dapeng Zhang, 2016

5._AMAZ_12

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5110 5

Dapeng Zhang, 2016

6._AMAZ_12

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5110 3

Dapeng Zhang, 2016

7._AMAZ_12

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5110 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

8._AMAZ_12 GC-05-010-1-10

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

9._AMAZ_12 GC-05-010-1-10

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1

10._AMAZ_12 GC-05-010-1-10

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

11._AMAZ_12 GC-05-010-1-10

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP2

12._AMAZ_12 GC-05-010-1-10

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

13._AMAZ_12 GC-05-158-4-11

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP4

14._AMAZ_12 GC-05-158-4-11

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

15._AMAZ_12 GC-05-158-4-11

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

16._AMAZ_12

identical
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5411 2 > FP

Dapeng Zhang, 2016

17._AMAZ_12 GC-05-158-4-11

identical
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP3

18._RB_33_/3_[BRA] RUQ_40

identical
20 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

19._AMAZ_12

98.6 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5411 4

Dapeng Zhang, 2016

20._AMAZ_12 GC-05-158-4-11

98.6 %
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1270	7	TcSNP1253	8	TcSNP1165	9	TcSNP1075	10	TcSNP1062
11	TcSNP1060	12	TcSNP998	13	TcSNP994	14	TcSNP953	15	TcSNP929
16	TcSNP917	17	TcSNP891	18	TcSNP872	19	TcSNP723	20	TcSNP645
21	TcSNP619	22	TcSNP591	23	TcSNP577	24	TcSNP560	25	TcSNP534
26	TcSNP529	27	TcSNP469	28	TcSNP429	29	TcSNP372	30	TcSNP242
31	TcSNP230	32	TcSNP226	33	TcSNP151	34	TcSNP150	35	TcSNP32
36	TcSNP25